Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015938783.1_cds_XP_016483562.1_74665
CDS Infomation

[gene=LOC107804228] [db_xref=GeneID:107804228] [protein=DExH-box ATP-dependent RNA helicase DExH11-like] [protein_id=XP_016483562.1] [location=join(4082..4166,4376..4490,4672..5059,5342..5497,5603..5713,6707..6760,8839..9096,10064..10173,10663..10816,11590..12046,12562..12776,12900..13138,14466..14592,14755..14967)] [gbkey=CDS]
Sequence

ATGGTAGATGTATGGAGACAGGGTTTCTCTGACTTGTCAGCGTGGAAATTGCTGGCAGTG
AAGAGGTTGATTGCTATCATGAAAGCTTGCGCTAGGAGGGCATGTAAGAGATGTTTCATT
TTTCCATTGCAGGTACCAAACACAATTGAATTTGCAGACTGGATTGGTCGAACAAAACAA
AAGCAAATTCGTGTGACTGGGACGACCAAACGACCGGTCCCATTGGAGCATTGTCTCTTC
TATTCTGGGGAGTTTTACAAAGTATGTGAGAACGAAGAGTTTCTGCCTCAGGGATTTAAA
GCAGCCAAAGATGTACATAAGAAGAAAACCACTAGTTCTGTCTCTGGTGGCACCAGCTTG
CATCCTGGGTCTTCAACAGCTGCTGATAAGGCTCGAGGACAGAGGCGTGATAGCTCTTCT
CAGGGGAAGCAACACAAGCATTCTGGTCCCCAAAAATCAGGGAATTTTGGTACTGGTTGG
GGAACCCAAAGCAATGGCTTTGGACAGAACAATATGGGCTTAAGGAGATCAGAGGCGTCT
TTGTGGTTGACACTGATTAACAAACTCTTGAAGAAATCGCTGTTACCTGTGGTTATATTT
TGTTTTTCGAAGAATCGATGTGACAAATCAGCTGATAACATCCCTGGTACTGATCTCACA
AGTAGCTCTGAGAAAAGTGAAATTAGGATATTCTGTGATAAAGCATTTTCGAGGCTTAAG
GGATCTGACAGAAACTTACCGCAGATTGTCAGAATTCAGAGCCTTCTCCATAGAGGTATT
GCTGTGCATCATGCAGGGCTTCTCCCAATTGTCAAGGAAGTTGTAGAAATGCTTTTTTGT
CGAGGTTTGGTTAAGGTTCTGTTCTCAACAGAGACATTTGCAATGGGAGTTAATGCTCCA
GCTAGGACGGTTGTTTTTGATTCTTTAAGAAAGTTTGATGGCAAGGAATTTAGGCAGCTA
CTTCCTGGAGAGTACACTCAGATGGCTGGACGTGCTGGAAGGAGAGGGCTTGATAAAACT
GGCACAGTTGTGGTGATGTGCCGTGATGAGATCCCTTACGAGAATGATTTGAAGCATGTA
ATAGTTGGTACTGCAACTAGGCTTGAATCTCAGTTTCGACTGACCTACATCATGATTTTG
CATCTACTTCGGGTTGAAGAACTGAAGGTCGAGGACATGCTGAAAAGAAGTTTTGCTGAA
TTTCATGCTCAGAAGAAACTACCTGAGCAGCAACAACTCTTGATGCGAAAGCTTGCTCAG
CCAACAAAATCCGTTGAATGCATAAAGGGTGAACCAGCAATTGAGGACTACTATGACATG
TACTCGGAGGCAGAAAAATATAGCCACCAAATAGCAGAGGCAGTAATGCAGTCGCCAGCT
TCTCAGCAGTATCTTTCTCCTGGGAGAGCAGTGGTTGTAAAATCACAATCAGGTCAAGAT
CACTTGCTAGGCGTTGTGGTGAAGACACCTTCCTCTAACAACAGACAGTATATAGTTTTA
GTTCTGACTCCTGAGTTGCCTTCAACTCTGCAAGCTTCGTCAGATATAAGTGACAGAAAA
GACCAAAAAAATCCTGAATTTCAGGTATTAGTGCCTAAATCAAGACGGGGTTATGAGGAT
GAGTATTGCTCGTCAGTCTCCTCCCGGAAGGGATCTGGCATTATCAACATTAAATTGCCT
CACCGCGGTAATGCTGCTGGGATGAATTATGAGGTTCGAGGAGTTGAAAACAAGGATTTC
TTGTATATATGTGTTAAAAAAATTAAGATAGACCAAGTTCGGCTTCTTGAAGATGTTAGT
GCTGGGGCCTACTCAAACACTATACAACAGCTGCTGGGTCTGAAATCTGAAGGAAATAAG
TATCCTCCAGCCTTAGATCCGATTAAAGATCTGAAGTTGAAAGACGTGAATCTTGTGGAA
GCATACTACAAATGGAATAATCTCTTGCAAAAAATGGCACAAAATAAGTGTCATGGTTGT
ATTAAATTGGAGGAGCACATGAAATTAGCTAGAGAATTGAAGCGGCACCATGAGGAAGTG
AATCATTTGAAGTTTCAAATGTCAGATGAGGCACTTCAGCAGATGCCAGATTTTCAGGGT
CGGATAGATGTGCTTAAAGAAATTGGCTGTATAGATGCTGACCTTGTAGTTCAAATCAAA
GGTCGTGTTGCTTGCGAAATGAATTCCGGAGAGGAGTTGATATGCACCGAATGTTTATTT
GAGAATCAACTAGATGACCTGGAACCAGAAGAGGCAGTGGCTATCATGTCTTCCTTTGTG
TTTCAGCAGAAGGAGACTTCTGAATCCTTTCTCACGCCAAAGCTTTCTCTGGCTAAAAAA
AGATTATACGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTACCAATC
GATCCGCAGGAGTATGCCCAAGAAAATCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAA
TGGGCAAAGGGCACCCCATTTGCTGAAATCTGTGAACTTACTGATGTCCCTGAAGGTTTA
ATAGTACGGACTATTGTCAGATTGGACGAGACATGTCGGGAATTTAGAAATGCTGCAGCA
ATTATGGGTAACTCTGCATTGTACAAGAAAATGGAAACTGCTTCTAATGTGATCAAGCGT
GACATCGTGTTTGCAGCTAGCTTGTACATTACTGGGGTTTGA

Peptide Sequence

PEP ID

XP_016483562.1
PEP Infomation

PREDICTED: DExH-box ATP-dependent RNA helicase DExH11-like [Nicotiana tabacum]
Sequence

MVDVWRQGFSDLSAWKLLAVKRLIAIMKACARRACKRCFIFPLQVPNTIEFADWIGRTKQ
KQIRVTGTTKRPVPLEHCLFYSGEFYKVCENEEFLPQGFKAAKDVHKKKTTSSVSGGTSL
HPGSSTAADKARGQRRDSSSQGKQHKHSGPQKSGNFGTGWGTQSNGFGQNNMGLRRSEAS
LWLTLINKLLKKSLLPVVIFCFSKNRCDKSADNIPGTDLTSSSEKSEIRIFCDKAFSRLK
GSDRNLPQIVRIQSLLHRGIAVHHAGLLPIVKEVVEMLFCRGLVKVLFSTETFAMGVNAP
ARTVVFDSLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEIPYENDLKHV
IVGTATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQ
PTKSVECIKGEPAIEDYYDMYSEAEKYSHQIAEAVMQSPASQQYLSPGRAVVVKSQSGQD
HLLGVVVKTPSSNNRQYIVLVLTPELPSTLQASSDISDRKDQKNPEFQVLVPKSRRGYED
EYCSSVSSRKGSGIINIKLPHRGNAAGMNYEVRGVENKDFLYICVKKIKIDQVRLLEDVS
AGAYSNTIQQLLGLKSEGNKYPPALDPIKDLKLKDVNLVEAYYKWNNLLQKMAQNKCHGC
IKLEEHMKLARELKRHHEEVNHLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIK
GRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSSFVFQQKETSESFLTPKLSLAKK
RLYETAIRLGELQAQFKLPIDPQEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGL
IVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNVIKRDIVFAASLYITGV

Transcript Sequence

Gene sequence data has not been registered.